shuffleseq

Function

Description

This takes a sequence as input and outputs one or more sequences whose order has been randomly shuffled. No bases or residues are changed, only their order.

The number of shuffled sequences output can be set by the '-shuffle' qualifier.

Usage

Command line arguments


Input file format

shuffleseq reads one or more sequence USAs.

Output file format

Each run will produce a different sequence.

Note that these two sequences have the same name.

Data files

None.

Notes

This program may be useful for producing sets of sequences which can be used to check the statistics of sequence similarity finding software.

References

None.

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It always exits with status 0.

Known bugs

None.

Author(s)

History

Target users

Comments