Uses of Class
org.biojava.bio.structure.Compound

Packages that use Compound
org.biojava.bio.structure Interfaces and classes for protein structure (PDB). 
 

Uses of Compound in org.biojava.bio.structure
 

Methods in org.biojava.bio.structure that return Compound
 Compound Compound.clone()
           
 Compound StructureImpl.getCompoundById(String molId)
           
 Compound Structure.getCompoundById(String molId)
          request a particular compound by its id
 Compound ChainImpl.getHeader()
          Returns the Header ( a Compound object) for this chain.
 Compound Chain.getHeader()
          Returns the Header ( a Compound object) for this chain.
 

Methods in org.biojava.bio.structure that return types with arguments of type Compound
 List<Compound> StructureImpl.getCompounds()
           
 List<Compound> Structure.getCompounds()
          get all the Compounds that are defined in the PDB Header
 

Methods in org.biojava.bio.structure with parameters of type Compound
 void ChainImpl.setHeader(Compound mol)
          Set the Header from the PDB file.
 void Chain.setHeader(Compound molId)
          Set the Header from the PDB file.
 

Method parameters in org.biojava.bio.structure with type arguments of type Compound
 void StructureImpl.setCompounds(List<Compound> molList)
           
 void Structure.setCompounds(List<Compound> molList)
          set the compounts