org.biojava.bio.structure.io
Class FileConvert

java.lang.Object
  extended by org.biojava.bio.structure.io.FileConvert

public class FileConvert
extends Object

Methods to convert a structure object into different file formats.

Since:
1.4
Author:
Andreas Prlic

Constructor Summary
FileConvert(Structure struc)
          Constructs a FileConvert object.
 
Method Summary
 boolean doPrintConnections()
          returns if the Connections should be added default is true;
 void setPrintConnections(boolean printConnections)
          enable/disable printing of connections connections are sometimes buggy in PDB files so there are some cases where one might turn this off.
 void toDASStructure(XMLWriter xw)
          convert a protein Structure to a DAS Structure XML response .
 String toPDB()
          Convert a structure into a PDB file.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

FileConvert

public FileConvert(Structure struc)
Constructs a FileConvert object.

Parameters:
struc - a Structure object
Method Detail

doPrintConnections

public boolean doPrintConnections()
returns if the Connections should be added default is true;

Returns:
if the printConnections flag is set

setPrintConnections

public void setPrintConnections(boolean printConnections)
enable/disable printing of connections connections are sometimes buggy in PDB files so there are some cases where one might turn this off.

Parameters:
printConnections -

toPDB

public String toPDB()
Convert a structure into a PDB file.

Returns:
a String representing a PDB file.

toDASStructure

public void toDASStructure(XMLWriter xw)
                    throws IOException
convert a protein Structure to a DAS Structure XML response .

Parameters:
xw - a XMLWriter object
Throws:
IOException - ...