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See:
Description
Interface Summary | |
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CharactersBlockListener | Listens to events that represent Nexus characters blocks. |
DataBlockListener | Listens to events that represent Nexus data blocks. |
DistancesBlockListener | Listens to events that represent Nexus distances blocks. |
NexusBlock | Represents a Nexus block. |
NexusBlockBuilder | Builds a Nexus block from listening to events. |
NexusBlockListener | Listens to events from NexusBlockParser objects to create objects. |
NexusBlockParser | Parses Nexus blocks. |
NexusFileListener | Listens to events fired by the Nexus parser. |
NexusObject | Represents general info about nexus objects. |
TaxaBlockListener | Listens to events that represent Nexus taxa blocks. |
TreesBlockListener | Listens to events that represent Nexus trees blocks. |
Class Summary | |
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CharactersBlock | Represents Nexus characters blocks. |
CharactersBlockBuilder | Builds Nexus characters blocks. |
CharactersBlockParser | Parses Nexus characters blocks. |
DataBlock | Represents Nexus data blocks. |
DataBlockBuilder | Builds Nexus characters blocks. |
DataBlockParser | Parses Nexus data blocks. |
DistancesBlock | Represents Nexus distances blocks. |
DistancesBlockBuilder | Builds Nexus distances blocks. |
DistancesBlockParser | Parses Nexus distances blocks. |
NexusBlock.Abstract | |
NexusBlockBuilder.Abstract | This abstract version knows how to build and add comments. |
NexusBlockParser.Abstract | All block parsers should derive from this abstract parser. |
NexusComment | Represents a Nexus comment, possibly nested. |
NexusFile | Represents Nexus files. |
NexusFileBuilder | Builds a Nexus file by listening to events. |
NexusFileFormat | Reads/writes Nexus files and fires events at a NexusFileListener object. |
NexusFileListener.Abstract | Example abstract implementation which all others should extend. |
TaxaBlock | Represents Nexus taxa blocks. |
TaxaBlockBuilder | Builds Nexus taxa blocks. |
TaxaBlockParser | Parses Nexus taxa blocks. |
TreesBlock | Represents Nexus trees blocks. |
TreesBlock.NewickTreeString | A simple representation of a Newick tree as a single string. |
TreesBlockBuilder | Builds Nexus taxa blocks. |
TreesBlockParser | Parses Nexus taxa blocks. |
Classes to support the I/O of Nexus files.
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