org.biojava.bio.seq
Class RemoteFeature.Region

java.lang.Object
  extended by org.biojava.bio.seq.RemoteFeature.Region
Enclosing interface:
RemoteFeature

public static final class RemoteFeature.Region
extends Object

A tuple of Location and sequence ID.

For local locations, the Region is just a wrapper for a Location. For remote Regions, it also contains a String representing the Sequence ID of the remote Location.

Since:
1.1
Author:
Matthew Pocock

Constructor Summary
RemoteFeature.Region(Location location, String seqID, boolean isRemote)
          Create a new Region.
 
Method Summary
 Location getLocation()
          Retrieve the Location of the Region.
 String getSeqID()
          Return the remote Sequence ID if this Region is on another Sequence (isRemote will return true), null otherwise.
 boolean isRemote()
          Return whether this Region is remote or local.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

RemoteFeature.Region

public RemoteFeature.Region(Location location,
                            String seqID,
                            boolean isRemote)
Create a new Region.

Parameters:
location - the Location of the Region
seqID - the ID of the Sequence containing the Location, or null if it is a local Region
Method Detail

getLocation

public Location getLocation()
Retrieve the Location of the Region.

Returns:
the Location of this Region

getSeqID

public String getSeqID()
Return the remote Sequence ID if this Region is on another Sequence (isRemote will return true), null otherwise.

Returns:
the ID of the remote Sequence containing this Region

isRemote

public boolean isRemote()
Return whether this Region is remote or local.

If this returns true, getSeqID() will return the ID of the remote sequence. Otherwise, getSeqID() will return null.

Returns:
true if this is a remote Region, false otherwise