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Bio::DDBJ::REST::Blast

Description

DDBJ (DNA DataBank of Japan) BLAST web service. See below for details and examples.

Users normally would want to use searchParamAsync or searchParallelAsync with RequestManager.

Public Instance Methods

extractPosition(result) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=extractPosition&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 203
def extractPosition(result); end
getSupportDatabaseList() click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=getSupportDatabaseList&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 207
def getSupportDatabaseList(); end
searchParallel(program, database, query, param) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParallel&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 211
def searchParallel(program, database, query, param); end
searchParallelAsync(program, database, query, param) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParallelAsync&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 215
def searchParallelAsync(program, database,
                        query, param); end
searchParam(program, database, query, param) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParam&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 220
def searchParam(program, database, query, param); end
searchParamAsync(program, database, query, param) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchParamAsync&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 224
def searchParamAsync(program, database,
                     query, param); end
searchSimple(program, database, query) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchSimple&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 229
def searchSimple(program, database, query); end
searchSimpleAsync(program, database, query) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=Blast&methodName=searchSimpleAsync&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 233
def searchSimpleAsync(program, database, query); end

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