Uses of Package
org.biojava.bio.gui.sequence

Packages that use org.biojava.bio.gui.sequence
org.biojava.bio.gui.sequence Graphical displays of biological sequences and associated annotations. 
 

Classes in org.biojava.bio.gui.sequence used by org.biojava.bio.gui.sequence
AbstractBeadRenderer
          AbstractBeadRenderer is a an abstract base class for the creation of FeatureRenderers which use a 'string of beads' metaphor for displaying features.
AbstractPeptideDigestRenderer
          A SequenceRenderer that renders a set of Features that match a FeatureFilter in such a way that they do not overlap in the display.
BasicFeatureRenderer
           
BeadFeatureRenderer
          BeadFeatureRenderers use a 'string of beads' metaphor for displaying features.
CircularFeatureRenderer
           
CircularRenderer
          Render information from a CircularRendererContext onto a graphics context.
CircularRendererContext
          A context providing information for rendering sequences into circular coordinate systems.
FeatureLabelRenderer.LabelMaker
           
FeatureRenderer
           
FeatureSource
          A closure that allows AbstractPeptideDigestRenderer implementations to obtain the features of the rendered sequence.
FilteringRenderer
           
GlyphFeatureRenderer
          A FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilter
ImageMap
          ImageMap represents a collection of image map hotspots.
ImageMap.HotSpot
          HotSpots represent an image map hotspot.
ImageMapRenderer
          ImageMapRenderers create strings representing Features suitable for use in HTML image maps.
LabelRenderer
          The interface for things that can render labels for a line of information about a sequence.
LayeredRenderer
          LayeredRenderer handles the lane offsets for MultiLineRenders.
MultiLineRenderer
          MultiLineRenderer is a SequenceRenderer which collects a number of other SequenceRenderers each of which render their own view of a Sequence.
OverlayMarker
          This is a dummy interface to permit identification of renderers whose output is to be overlaid along the lines of the Marker Interface pattern.
PairwiseRenderContext
          PairwiseRenderContext encapsulates information required for the rendering of a pair of sequences.
PairwiseSequenceRenderer
          PairwiseSequenceRenderers render information about the relationship between two sequences.
RectangularBeadRenderer
          RectangularBeadRenderer renders features as simple rectangles.
SequencePanel
          A panel that displays a Sequence.
SequenceRenderContext
          A context within which sequence information may be rendered.
SequenceRenderContext.Border
          The metric object for the 'border' area - the area between the extent of the rendered area and the beginning or end of the sequence.
SequenceRenderer
          The interface for things that can render a line of information about a sequence.
SequenceRendererWrapper
          An implementation of SequenceRenderer that delegates rendering to another renderer.
SequenceViewerEvent
          An event indicating that a mouse gesture was recognised within a widget that renders sequences.
SequenceViewerListener
           
SequenceViewerMotionListener
           
SixFrameRenderer
          Class that handles drawing in six frames for other classes.
ZiggyFeatureRenderer
          A feature renderer that draws non-contiguous features as a set of boxes joined by zig-zags.