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Packages that use UkkonenSuffixTree.SuffixNode | |
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org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of UkkonenSuffixTree.SuffixNode in org.biojava.bio.symbol |
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Methods in org.biojava.bio.symbol that return UkkonenSuffixTree.SuffixNode | |
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UkkonenSuffixTree.SuffixNode |
UkkonenSuffixTree.getRoot()
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UkkonenSuffixTree.SuffixNode |
UkkonenSuffixTree.jumpTo(UkkonenSuffixTree.SuffixNode starting,
CharSequence source,
int from,
int to)
Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string. |
UkkonenSuffixTree.SuffixNode |
UkkonenSuffixTree.walkTo(UkkonenSuffixTree.SuffixNode starting,
String source,
int from,
int to)
This method is used to walk down the tree, from a given node. |
Methods in org.biojava.bio.symbol with parameters of type UkkonenSuffixTree.SuffixNode | |
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protected ArrayList |
UkkonenSuffixTree.getAllNodes(UkkonenSuffixTree.SuffixNode root,
ArrayList list,
boolean leavesOnly)
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protected CharSequence |
UkkonenSuffixTree.getEdgeLabel(UkkonenSuffixTree.SuffixNode child)
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protected int |
UkkonenSuffixTree.getEdgeLength(UkkonenSuffixTree.SuffixNode child)
Tree navigation methods |
protected CharSequence |
UkkonenSuffixTree.getLabel(UkkonenSuffixTree.SuffixNode node)
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protected int |
UkkonenSuffixTree.getPathEnd(UkkonenSuffixTree.SuffixNode node)
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protected int |
UkkonenSuffixTree.getPathLength(UkkonenSuffixTree.SuffixNode node)
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UkkonenSuffixTree.SuffixNode |
UkkonenSuffixTree.jumpTo(UkkonenSuffixTree.SuffixNode starting,
CharSequence source,
int from,
int to)
Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string. |
UkkonenSuffixTree.SuffixNode |
UkkonenSuffixTree.walkTo(UkkonenSuffixTree.SuffixNode starting,
String source,
int from,
int to)
This method is used to walk down the tree, from a given node. |
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