org.biojava.bio.program.homologene
Interface Orthologue

All Known Implementing Classes:
SimpleOrthologue

public interface Orthologue

this entry contains data about the orthologue.


Method Summary
 String getAccession()
          get the Accession ID associated with this orthologue.
 String getHomologeneID()
          get the Homologene ID.
 String getLocusID()
          get the locus ID associated with this orthologue.
 Taxon getTaxon()
          return the Taxon associated with this orthologue
 int getTaxonID()
          a convenience method to return the TaxonID for thsi orhtologue.
 String getTitle()
          return the title used by Genbank for this protein
 void setTitle(String title)
           
 

Method Detail

getTitle

String getTitle()
return the title used by Genbank for this protein


getTaxon

Taxon getTaxon()
return the Taxon associated with this orthologue


getTaxonID

int getTaxonID()
a convenience method to return the TaxonID for thsi orhtologue.


getLocusID

String getLocusID()
get the locus ID associated with this orthologue. It can be null.


getHomologeneID

String getHomologeneID()
get the Homologene ID. This is unique and always defined.


getAccession

String getAccession()
get the Accession ID associated with this orthologue.


setTitle

void setTitle(String title)