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See:
Description
Interface Summary | |
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StructureIO | Defines the interface how to access Structure (- PDB file) input,output readers, writers. |
StructureIOFile | interface StructureIOFile extends the StructureIO interface and adds a few File specific methods. |
Class Summary | |
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CAConverter | Converts full atom representations to Calpha only ones. |
DASStructureClient | A DAS client that connects to a DAS structure service and returns a Biojava structure class. |
FileConvert | Methods to convert a structure object into different file formats. |
MMCIFFileReader | How to parse an mmCif file: |
PDBFileParser | This class implements the actual PDB file parsing. |
PDBFileReader | The wrapper class for parsing a PDB file. |
PDBMSDReader | retreive a structure from an installation of the MSD - search database ( http://www.ebi.ac.uk/msd/index.html , http://www.ebi.ac.uk/msd-srv/docs/dbdoc/ ) |
PDBSRSReader | reads a PDB file from a local SRS installation using getz Actually is the same as PDBFileReader, but instead of reading from a file stream, reads from a buffered stream. |
SeqRes2AtomAligner | Aligns the SEQRES residues to the ATOM residues. |
Exception Summary | |
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PDBParseException | An exception during the parsing of a PDB file. |
Input and Output of Structures
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