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Packages that use org.biojava.bio.gui.sequence | |
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org.biojava.bio.gui.sequence | Graphical displays of biological sequences and associated annotations. |
Classes in org.biojava.bio.gui.sequence used by org.biojava.bio.gui.sequence | |
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AbstractBeadRenderer
AbstractBeadRenderer is a an abstract base class
for the creation of FeatureRenderer s which use a
'string of beads' metaphor for displaying features. |
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AbstractPeptideDigestRenderer
A SequenceRenderer that renders a set of Features that match a FeatureFilter in such a way that they do not overlap in the display. |
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BasicFeatureRenderer
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BeadFeatureRenderer
BeadFeatureRenderer s use a 'string of beads'
metaphor for displaying features. |
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CircularFeatureRenderer
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CircularRenderer
Render information from a CircularRendererContext onto a graphics context. |
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CircularRendererContext
A context providing information for rendering sequences into circular coordinate systems. |
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FeatureLabelRenderer.LabelMaker
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FeatureRenderer
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FeatureSource
A closure that allows AbstractPeptideDigestRenderer implementations to obtain the features of the rendered sequence. |
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FilteringRenderer
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GlyphFeatureRenderer
A FeatureRenderer that renders a particular Glyph for Features accepted by a particular FeatureFilter |
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ImageMap
ImageMap represents a collection of image map
hotspots. |
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ImageMap.HotSpot
HotSpot s represent an image map hotspot. |
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ImageMapRenderer
ImageMapRenderer s create strings representing
Feature s suitable for use in HTML image
maps. |
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LabelRenderer
The interface for things that can render labels for a line of information about a sequence. |
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LayeredRenderer
LayeredRenderer handles the lane offsets for
MultiLineRender s. |
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MultiLineRenderer
MultiLineRenderer is a SequenceRenderer
which collects a number of other SequenceRenderer s
each of which render their own view of a Sequence . |
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OverlayMarker
This is a dummy interface to permit identification of renderers whose output is to be overlaid along the lines of the Marker Interface pattern. |
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PairwiseRenderContext
PairwiseRenderContext encapsulates information
required for the rendering of a pair of sequences. |
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PairwiseSequenceRenderer
PairwiseSequenceRenderer s render information about the
relationship between two sequences. |
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RectangularBeadRenderer
RectangularBeadRenderer renders features as simple
rectangles. |
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SequencePanel
A panel that displays a Sequence. |
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SequenceRenderContext
A context within which sequence information may be rendered. |
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SequenceRenderContext.Border
The metric object for the 'border' area - the area between the extent of the rendered area and the beginning or end of the sequence. |
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SequenceRenderer
The interface for things that can render a line of information about a sequence. |
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SequenceRendererWrapper
An implementation of SequenceRenderer that delegates rendering to another renderer. |
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SequenceViewerEvent
An event indicating that a mouse gesture was recognised within a widget that renders sequences. |
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SequenceViewerListener
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SequenceViewerMotionListener
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SixFrameRenderer
Class that handles drawing in six frames for other classes. |
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ZiggyFeatureRenderer
A feature renderer that draws non-contiguous features as a set of boxes joined by zig-zags. |
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