Uses of Interface
org.biojava.bio.program.ssaha.SearchListener

Packages that use SearchListener
org.biojava.bio.program.ssaha SSAHA sequence searching API. 
 

Uses of SearchListener in org.biojava.bio.program.ssaha
 

Classes in org.biojava.bio.program.ssaha that implement SearchListener
 class HitMerger
          A listener that merges overlapping hits and culls all hits under a given length.
static class SearchListener.Echo
          A SearchListener that prints events out to a PrintStream.
static class SearchListener.FilterByLength
          A simple listener that filters out all hits that are too short.
static class SearchListener.Tee
          A SearchListener that passes events on to two delegate listeners.
static class SearchListener.Wrapper
          A simple wrapper implementation.
 

Methods in org.biojava.bio.program.ssaha with parameters of type SearchListener
 void CompactedDataStore.fireHits(int word, int offset, SearchListener listener)
           
 void DataStore.search(String id, SymbolList symList, SearchListener listener)
          Search the DataStore with a symbol list.
 void CompactedDataStore.search(String seqID, SymbolList symList, SearchListener listener)
           
 

Constructors in org.biojava.bio.program.ssaha with parameters of type SearchListener
HitMerger(SearchListener delegate, int minLength)
          Build a new HitMerger that will pass events on to a delegate.
SearchListener.FilterByLength(SearchListener delegate, int minLength)
           
SearchListener.Tee(SearchListener d1, SearchListener d2)
           
SearchListener.Wrapper(SearchListener delegate)