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Packages that use AbstractSequenceDB | |
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org.biojava.bio.seq.db | Collections of biological sequence data. |
org.biojava.bio.seq.distributed | Sequences and SequenceDBs which are composed from data taken from a number of data sources. |
Uses of AbstractSequenceDB in org.biojava.bio.seq.db |
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Subclasses of AbstractSequenceDB in org.biojava.bio.seq.db | |
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class |
AnnotatedSequenceDB
SequenceDB implementation which lazily applies a SequenceAnnotator to sequences retrieved from a SequenceDB. |
class |
CachingSequenceDB
SequenceDB implementation that caches the results of another SequenceDB. |
class |
DummySequenceDB
DummySequenceDB is an implementation which contains
only a DummySequence . |
class |
HashSequenceDB
An implementation of SequenceDB that uses an underlying HashMap to store the sequence objects. |
class |
IndexedSequenceDB
This class implements SequenceDB on top of a set of sequence files and sequence offsets within these files. |
class |
SequenceDBWrapper
An abstract implementation of SequenceDB that wraps up another database. |
class |
SubSequenceDB
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class |
ViewingSequenceDB
SequenceDB implementation that returns new SequenceView instances wrapping the sequences in an underlying database. |
Uses of AbstractSequenceDB in org.biojava.bio.seq.distributed |
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Subclasses of AbstractSequenceDB in org.biojava.bio.seq.distributed | |
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class |
DistributedSequenceDB
Sequence database from the meta-DAS system. |
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