Class Specialization
FullInfo
Stores all pieces of information delivered with an alignment in a Blast report.

BlastHsp

FullInfo

FullInfo
Include Headers
blast.h
Specialization of
BlastHsp
Functions

databaseOrientationPlus | Orientation of the database sequence within a Blast HSP alignment.
getAlignment | Turns a HSP from a Blast search into an Alignment object. (BlastHsp)
getBitScore | The bit score associated with a Blast HSP.
getBlastMatchScore | The Smith-Waterman score associated with a Blast HSP.
getDatabaseBegin | The begin position of the HSP on the database sequence. (BlastHsp)
getDatabaseEnd | The end position of the HSP on the database sequence. (BlastHsp)
getEValue | The e-value associated with a Blast HSP. (BlastHsp)
getNumGaps | The number of gaps within a Blast HSP alignment.
getQueryBegin | The begin position of the HSP on the query sequence. (BlastHsp)
getQueryEnd | The end position of the HSP on the query sequence. (BlastHsp)
length | The number of items/characters. (BlastHsp)
queryOrientationPlus | Orientation of the query sequence within a Blast HSP alignment.

Example Programs
Blast Reports
SeqAn - Sequence Analysis Library - www.seqan.de

Page built @2012/03/14 16:34:51