Shortcut
CharString
A string of char.
CharString
Shortcut for
Alloc String
String<char, Alloc<> >
Functions

addArgumentText | Return a CommandLineOption object extended by an argument text.
addHelpLine | Adds an extra line of text below the help text of an option.
addLine | Adds a line of text to the help output of the CommandLineParser.
addSection | Adds a new section the help output of the CommandLineParser.
addTitleLine | Adds a line of text to the title output of the CommandLineParser.
addUsageLine | Adds a line of text to the usage output of the CommandLineParser.
addVersionLine | Adds a line of text to the version output of the CommandLineParser.
appendName | Appends a name to a name store.
appendRead | Appends a read to a fragment store.
argumentText | Returns the argument text of a CommandLineOption object.
assignCroppedSeqId | Extracts the sequence id up to the first whitespace of a sequence file fragment.
assignQual | Extracts the quality values of a sequence file fragment.
assignQualId | Extracts the quality value id of a sequence file fragment.
assignSeqId | Extracts the sequence id of a sequence file fragment.
databaseName | Reference to the name (identifier) of the database in a Blast report.
getArgumentValue | Returns an argument set on the command line.
getDatabaseName | The name (identifier) of the database in a Blast report.
getIdByName | Appends a name to a name store.
getQueryName | The name (identifier) of the query in a Blast report.
loadContigs | Loads contigs into fragment store.
loadReads | Loads reads into fragment store.
queryName | Reference to the name (identifier) of the query in a Blast report.
setHelpText | Sets the help text associated with the CommandLineOption object.
setLongName | Sets the long-name of a CommandLineOption object.

See Also
CharIterator
SeqAn - Sequence Analysis Library - www.seqan.de

Page built @2012/03/14 16:34:50