Class Specialization
Dna
Alphabet for DNA.

Simple Type

SimpleType

Dna

Dna
Include Headers
seqan/basic.h
Remarks
The ValueSize of Dna is 4. The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'T' = 3.
Objects of type Dna can be converted to various other types and vice versa. An object that has a value not in {'A', 'C', 'G', 'T'} is converted to 'A'.
Dna is typedef for SimpleType<char,Dna_>, while Dna_ is a helper specialization tag class.
Specialization of
SimpleType
Implements
Simple Type
Metafunctions

IsSimple | Tests type to be simple. (SimpleType)
Spec | The spec of a class. (SimpleType)
Value | Type of the items in the container. (SimpleType)

Functions

assign | Assigns one object to another object. (SimpleType)
assign | Assigns one object to another object. (SimpleType)
convertResidueToFrequencyDist | Coverts a residue to a frequency distribution (profile).
ordValue | Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType)

Example Programs
Alphabets
See Also
ValueSize, Dna5, DnaIterator, DnaString
SeqAn - Sequence Analysis Library - www.seqan.de

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