bio-0.5.2: A bioinformatics library

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Index - S

SA | Bio.Alignment.Soap
SAM | Bio.Alignment.Soap
sameRead | Bio.Alignment.Bowtie
score |
1 (Function) | Bio.Alignment.BED
2 (Function) | Bio.GFF3.Feature
Selector | Bio.Alignment.AlignData
Seq | Bio.Sequence.SeqData, Bio.Sequence
SeqData | Bio.Sequence.SeqData, Bio.Sequence.SFF, Bio.Sequence
seqData |
1 (Function) | Bio.Location.ContigLocation
2 (Function) | Bio.Location.Location
3 (Function) | Bio.Location.SeqLocation
4 (Function) | Bio.GFF3.FeatureHierSequences
seqdata | Bio.Sequence.SeqData, Bio.Sequence
seqDataPadded |
1 (Function) | Bio.Location.ContigLocation
2 (Function) | Bio.Location.Location
seqheader | Bio.Sequence.SeqData, Bio.Sequence
SeqId | Bio.Alignment.BlastData
seqid | Bio.GFF3.Feature
seqlabel | Bio.Sequence.SeqData, Bio.Sequence
seqlength | Bio.Sequence.SeqData, Bio.Sequence
SeqLoc | Bio.Location.SeqLocation
seqLoc | Bio.GFF3.Feature
SeqLocMap | Bio.Location.SeqLocMap
seqmap | Bio.Sequence.SeqData, Bio.Sequence
SeqName | Bio.Location.OnSeq
seqNt | Bio.Location.Position
seqNtPadded | Bio.Location.Position
SeqPos | Bio.Location.SeqLocation
seqqual | Bio.Sequence.SeqData, Bio.Sequence
seqToStr | Bio.Sequence.SeqData
sequ |
1 (Function) | Bio.Alignment.Bowtie
2 (Function) | Bio.Alignment.Soap
Sequence | Bio.Sequence.SeqData, Bio.Sequence
sequence' | Bio.Util
sequences | Bio.GFF3.FeatureHierSequences
Ser | Bio.Sequence.SeqData, Bio.Sequence
setHeader | Bio.Sequence.SeqData, Bio.Sequence
SFF |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
sffToSequence | Bio.Sequence.SFF
Shape | Bio.Sequence.HashWord
showalign | Bio.Alignment.AlignData
sigint | Bio.Sequence.SFF_filters
simpleMx | Bio.Alignment.Matrices
slength |
1 (Function) | Bio.Alignment.BlastData
2 (Function) | Bio.Alignment.BlastFlat
slide |
1 (Function) | Bio.Location.Position
2 (Function) | Bio.Location.ContigLocation
small | Bio.Sequence.AminoProperties
SoapAlign | Bio.Alignment.Soap
SoapAlignMismatch | Bio.Alignment.Soap
sortExons | Bio.GFF3.SGD
source | Bio.GFF3.Feature
splitWhen | Bio.Util
start | Bio.GFF3.Feature
startPos |
1 (Function) | Bio.Location.ContigLocation
2 (Function) | Bio.Location.Location
STP | Bio.Sequence.SeqData, Bio.Sequence
Strand |
1 (Type/Class) | Bio.Alignment.BlastData, Bio.Alignment.BlastFlat
2 (Type/Class) | Bio.Location.Strand
strand |
1 (Function) | Bio.Alignment.PSL
2 (Function) | Bio.Location.Position
3 (Function) | Bio.Location.ContigLocation
4 (Function) | Bio.Alignment.Bowtie
5 (Function) | Bio.Alignment.Soap
6 (Function) | Bio.Alignment.BED
7 (Function) | Bio.GFF3.Feature
Stranded | Bio.Location.Strand
stranded | Bio.Location.Strand
strandP | Bio.Sequence.AminoProperties
Strands | Bio.Alignment.BlastData, Bio.Alignment.BlastFlat
subject |
1 (Function) | Bio.Alignment.BlastData
2 (Function) | Bio.Alignment.BlastFlat
SubstMx | Bio.Alignment.AlignData