bio-0.5.2: A bioinformatics library

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Index - R

rapid_adapter | Bio.Sequence.SFF_filters
rbToSequence | Bio.Sequence.SFF
RCA | Bio.Sequence.GeneOntology, Bio.Sequence.GOA
rcontig | Bio.Sequence.HashWord, Bio.Sequence
rcpacked | Bio.Sequence.HashWord, Bio.Sequence
read2Bit | Bio.Sequence.TwoBit, Bio.Sequence
readACE | Bio.Alignment.ACE
readbase | Bio.Alignment.Bowtie
readBED | Bio.Alignment.BED
ReadBlock |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
readFasta | Bio.Sequence.Fasta, Bio.Sequence
readFastaQual | Bio.Sequence.Fasta, Bio.Sequence
readFastQ | Bio.Sequence.FastQ, Bio.Sequence
readGO | Bio.Sequence.GOA
readGOA | Bio.Sequence.GeneOntology, Bio.Sequence.GOA
ReadHeader |
1 (Type/Class) | Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF
readIllumina | Bio.Sequence.FastQ, Bio.Sequence
ReadName |
1 (Type/Class) | Bio.Sequence.SFF_name, Bio.Sequence.SFF
2 (Data Constructor) | Bio.Sequence.SFF_name, Bio.Sequence.SFF
readnt | Bio.Alignment.Soap
readNuc | Bio.Sequence
readObo | Bio.Sequence.GeneOntology, Bio.Sequence.GOA
readPhd | Bio.Sequence.Phd, Bio.Sequence
readProt | Bio.Sequence
readPSL | Bio.Alignment.PSL
readQual | Bio.Sequence.Fasta, Bio.Sequence
reads | Bio.Alignment.ACE
readSangerQ | Bio.Sequence.FastQ, Bio.Sequence
readSFF | Bio.Sequence.SFF
readTerms | Bio.Sequence.GeneOntology, Bio.Sequence.GOA
readXML |
1 (Function) | Bio.Alignment.BlastXML
2 (Function) | Bio.Alignment.BlastFlat
read_header | Bio.Sequence.SFF
read_name | Bio.Sequence.SFF
recoverSFF | Bio.Sequence.SFF
refbase | Bio.Alignment.Bowtie
refCLoc | Bio.Alignment.Bowtie
refCSeqLoc |
1 (Function) | Bio.Alignment.Bowtie
2 (Function) | Bio.Alignment.Soap
refname |
1 (Function) | Bio.Alignment.Bowtie
2 (Function) | Bio.Alignment.Soap
refnt | Bio.Alignment.Soap
refSeqLoc |
1 (Function) | Bio.Alignment.Bowtie
2 (Function) | Bio.Alignment.Soap
refSeqPos |
1 (Function) | Bio.Alignment.Bowtie
2 (Function) | Bio.Alignment.Soap
refstart | Bio.Alignment.Soap
region | Bio.Sequence.SFF_name, Bio.Sequence.SFF
removePrefix | Bio.Sequence.KEGG
Repl | Bio.Alignment.AlignData
repmatch | Bio.Alignment.PSL
results | Bio.Alignment.BlastData, Bio.Alignment.BlastFlat
Rev |
1 (Data Constructor) | Bio.Alignment.AlignData
2 (Data Constructor) | Bio.Alignment.BED
RevCompl | Bio.Location.Strand
revCompl | Bio.Location.Strand
revcompl | Bio.Sequence.SeqData, Bio.Sequence
revcompl' | Bio.Sequence.SeqData, Bio.Sequence
rna_adapter | Bio.Sequence.SFF_filters
rna_adapter2 | Bio.Sequence.SFF_filters
rna_adapter3 | Bio.Sequence.SFF_filters
rRNAs | Bio.GFF3.SGD
runGFF | Bio.GFF3.FeatureHierSequences
runGFFIO | Bio.GFF3.FeatureHierSequences