Bio.Sequence.SeqData

# Data structure

data Sequence t

type Offset

type SeqData

type Qual

type QualData

# Accessor functions

(!)

seqlength

seqlabel

seqheader

seqdata

(?)

hasqual

seqqual

# Adding information to header

appendHeader

setHeader

# Converting to and from [Char]

fromStr

toStr

# Sequence utilities

defragSeq

seqmap

castSeq

# Nucleotide functionality

compl

revcompl

revcompl'

data Nuc

castToNuc

# Protein functionality

data Amino

translate

fromIUPAC

toIUPAC

castToAmino

# Display a nicely formated sequence.

putSeqLn

seqToStr

# Default type for sequences

data Unknown