bio-0.5.2: A bioinformatics library

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Index - P

packFlows | Bio.Sequence.SFF
pairend | Bio.Alignment.Soap
pam30 | Bio.Alignment.Matrices
pam70 | Bio.Alignment.Matrices
parentIds | Bio.GFF3.Feature
parents |
1 (Function) | Bio.GFF3.FeatureHier
2 (Function) | Bio.GFF3.FeatureHierSequences
parentsM | Bio.GFF3.FeatureHier
parse |
1 (Function) | Bio.Alignment.Blast
2 (Function) | Bio.Sequence.FastQ
3 (Function) | Bio.Alignment.Bowtie
4 (Function) | Bio.Alignment.Soap
5 (Function) | Bio.GFF3.Feature
6 (Function) | Bio.GFF3.FeatureHierSequences
parseMismatch | Bio.Alignment.Soap
parsePSL | Bio.Alignment.PSL
parseWithFasta | Bio.GFF3.Feature
perSeq | Bio.Location.OnSeq
perSeqUpdate | Bio.Location.OnSeq
phase | Bio.GFF3.Feature
Phe | Bio.Sequence.SeqData, Bio.Sequence
Plus | Bio.Alignment.BlastData, Bio.Alignment.BlastFlat
polar | Bio.Sequence.AminoProperties
Pos |
1 (Type/Class) | Bio.Location.Position
2 (Data Constructor) | Bio.Location.Position
posInto |
1 (Function) | Bio.Location.ContigLocation
2 (Function) | Bio.Location.Location
positive | Bio.Sequence.AminoProperties
posOutof |
1 (Function) | Bio.Location.ContigLocation
2 (Function) | Bio.Location.Location
Pro | Bio.Sequence.SeqData, Bio.Sequence
Proc | Bio.Sequence.GeneOntology, Bio.Sequence.GOA
progressive | Bio.Alignment.Multiple
PSL |
1 (Type/Class) | Bio.Alignment.PSL
2 (Data Constructor) | Bio.Alignment.PSL
pslHeader | Bio.Alignment.PSL
ptest | Bio.Alignment.ACE
putSeqLn | Bio.Sequence.SeqData