bio-0.5.2: A bioinformatics library

Safe Haskell | None

Bio.GFF3.SGD

# Documentation

chromosomes :: FeatureHierSequences -> [Feature]

genes :: FeatureHierSequences -> [Feature]

rRNAs :: FeatureHierSequences -> [Feature]

sortExons :: (Error e, MonadError e m) => [Feature] -> m [Feature]

geneSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a)

geneSeqLoc :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m SeqLoc

geneCDSes :: FeatureHierSequences -> Feature -> [Feature]

noncodingSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a)

noncodingSeqLoc :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m SeqLoc

noncodingExons :: FeatureHierSequences -> Feature -> [Feature]

namedSLM :: FeatureHierSequences -> SeqLocMap Feature

geneCDS_SLM :: (Error e, MonadError e m) => FeatureHierSequences -> m (SeqLocMap Feature)