Uses of Class
org.biojava.bio.structure.align.StructurePairAligner

Packages that use StructurePairAligner
org.biojava.bio.structure.gui A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. 
org.biojava.bio.structure.gui.events Some event classes for the protein structure GUIs. 
org.biojava.bio.structure.gui.util Some utility classes for the protein structure GUIs. 
 

Uses of StructurePairAligner in org.biojava.bio.structure.gui
 

Methods in org.biojava.bio.structure.gui that return StructurePairAligner
 StructurePairAligner SequenceDisplay.getStructurePairAligner()
           
 

Methods in org.biojava.bio.structure.gui with parameters of type StructurePairAligner
 void SequenceDisplay.setStructurePairAligner(StructurePairAligner structurePairAligner)
           
 

Constructors in org.biojava.bio.structure.gui with parameters of type StructurePairAligner
SequenceDisplay(StructurePairAligner structurePairAligner)
           
 

Uses of StructurePairAligner in org.biojava.bio.structure.gui.events
 

Constructors in org.biojava.bio.structure.gui.events with parameters of type StructurePairAligner
JmolAlignedPositionListener(BiojavaJmol parent, StructurePairAligner alig)
           
 

Uses of StructurePairAligner in org.biojava.bio.structure.gui.util
 

Methods in org.biojava.bio.structure.gui.util with parameters of type StructurePairAligner
 void AlternativeAlignmentFrame.setStructurePairAligner(StructurePairAligner aligner)