Uses of Interface
org.biojava.bio.search.SeqSimilaritySearchResult

Packages that use SeqSimilaritySearchResult
org.biojava.bio.program.ssbind Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD. 
org.biojava.bio.search Interfaces and classes for representing sequence similarity search results. 
 

Uses of SeqSimilaritySearchResult in org.biojava.bio.program.ssbind
 

Methods in org.biojava.bio.program.ssbind that return SeqSimilaritySearchResult
 SeqSimilaritySearchResult BlastLikeSearchBuilder.makeSearchResult()
           
 

Uses of SeqSimilaritySearchResult in org.biojava.bio.search
 

Classes in org.biojava.bio.search that implement SeqSimilaritySearchResult
 class SequenceDBSearchResult
          Deprecated. SimpleSeqSimilaritySearchResult has been made Annotatable and is now functionally identical.
 class SimpleSeqSimilaritySearchResult
          SimpleSeqSimilaritySearchResult objects represent a result of a search of a SymbolList against the sequences within a SequenceDB object.
 

Methods in org.biojava.bio.search that return SeqSimilaritySearchResult
 SeqSimilaritySearchResult SearchBuilder.makeSearchResult()
          The makeSearchResult method returns a SeqSimilaritySearchResult instance created from accumulated data.
 SeqSimilaritySearchResult SeqSimilaritySearcher.search(SymbolList querySeq, SequenceDB db, Map searchParameters)
          Using this sequence similarity searcher, search with the given sequence against the given sequence database.