Uses of Interface
org.biojava.bio.seq.io.StreamParser

Packages that use StreamParser
org.biojava.bio.seq.io Classes and interfaces for processing and producing flat-file representations of sequences. 
org.biojava.bio.seq.io.game Event-driven parsing system for the Gene Annotation Markup Elements (GAME). 
org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. 
 

Uses of StreamParser in org.biojava.bio.seq.io
 

Methods in org.biojava.bio.seq.io that return StreamParser
 StreamParser WordTokenization.parseStream(SeqIOListener siol)
           
 StreamParser SymbolTokenization.parseStream(SeqIOListener listener)
          Return an object which can parse an arbitrary character stream into symbols.
 StreamParser CharacterTokenization.parseStream(SeqIOListener listener)
           
 StreamParser AlternateTokenization.parseStream(SeqIOListener listener)
          Will throw an exception.
 

Methods in org.biojava.bio.seq.io with parameters of type StreamParser
protected  void EmblLikeFormat.processSequenceLine(String line, StreamParser parser)
          Deprecated. Dispatch symbol data from SQ-block line of an EMBL-like file.
 

Uses of StreamParser in org.biojava.bio.seq.io.game
 

Methods in org.biojava.bio.seq.io.game with parameters of type StreamParser
 void SequenceContentHandlerBase.setStreamParser(StreamParser parser)
          assign a StreamParser object to instance.
 

Uses of StreamParser in org.biojava.bio.symbol
 

Methods in org.biojava.bio.symbol that return StreamParser
 StreamParser SoftMaskedAlphabet.CaseSensitiveTokenization.parseStream(SeqIOListener l)
          The current implementation only supports character parsing.