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## Uses of Package
org.biojava.bio.dp.twohead

Packages that use org.biojava.bio.dp.twohead
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms.
org.biojava.bio.dp.twohead |

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp
CellCalculatorFactoryMaker The interface for all functions that can calculate the 'scores' array for a given cell.

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp.twohead
AbstractMatrixPairDPCursor
Cell A single cell in the DP matrix.
CellCalculator The interface for all functions that can calculate the 'scores' array for a given cell.
CellCalculatorFactory
CellCalculatorFactoryMaker The interface for all functions that can calculate the 'scores' array for a given cell.
EmissionCache Cache for columns of emission probabilities in pair-wise alignment algorithms.
PairDPCursor A cursor over a DP matrix.
PairDPMatrix Storage structure for intermediate values from a pairwise dynamic programming run.

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