Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Class
org.biojava.bio.symbol.UkkonenSuffixTree.SuffixNode

Packages that use UkkonenSuffixTree.SuffixNode
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them.

Uses of UkkonenSuffixTree.SuffixNode in org.biojava.bio.symbol

Methods in org.biojava.bio.symbol that return UkkonenSuffixTree.SuffixNode
`UkkonenSuffixTree.SuffixNode` | `UkkonenSuffixTree.getRoot()`
`UkkonenSuffixTree.SuffixNode` | `UkkonenSuffixTree.jumpTo(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to)` Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.
`UkkonenSuffixTree.SuffixNode` | `UkkonenSuffixTree.walkTo(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to)` This method is used to walk down the tree, from a given node.

Methods in org.biojava.bio.symbol with parameters of type UkkonenSuffixTree.SuffixNode
`protected ArrayList` | `UkkonenSuffixTree.getAllNodes(UkkonenSuffixTree.SuffixNode root, ArrayList list, boolean leavesOnly)`
`protected CharSequence` | `UkkonenSuffixTree.getEdgeLabel(UkkonenSuffixTree.SuffixNode child)`
`protected int` | `UkkonenSuffixTree.getEdgeLength(UkkonenSuffixTree.SuffixNode child)` Tree navigation methods
`protected CharSequence` | `UkkonenSuffixTree.getLabel(UkkonenSuffixTree.SuffixNode node)`
`protected int` | `UkkonenSuffixTree.getPathEnd(UkkonenSuffixTree.SuffixNode node)`
`protected int` | `UkkonenSuffixTree.getPathLength(UkkonenSuffixTree.SuffixNode node)`
`UkkonenSuffixTree.SuffixNode` | `UkkonenSuffixTree.jumpTo(UkkonenSuffixTree.SuffixNode starting, CharSequence source, int from, int to)` Just like walkTo, but faster when used during tree construction, as it assumes that a mismatch can only occurs with the last character of the target string.
`UkkonenSuffixTree.SuffixNode` | `UkkonenSuffixTree.walkTo(UkkonenSuffixTree.SuffixNode starting, String source, int from, int to)` This method is used to walk down the tree, from a given node.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES