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## Uses of Interface
org.biojava.bio.program.homologene.SimilarityType

Packages that use SimilarityType
org.biojava.bio.program.homologene | Support classes for Homologene data.

Uses of SimilarityType in org.biojava.bio.program.homologene

Classes in org.biojava.bio.program.homologene that implement SimilarityType
`static class` | `SimilarityType.PlaceHolder`

Fields in org.biojava.bio.program.homologene declared as SimilarityType
`static SimilarityType` | `SimilarityType.CURATED`
`static SimilarityType` | `SimilarityType.MULTIPLE`
`static SimilarityType` | `SimilarityType.TWIN`

Methods in org.biojava.bio.program.homologene that return SimilarityType
`SimilarityType` | `SimpleOrthoPair.getSimilarity()`
`SimilarityType` | `OrthoPair.getSimilarity()` gets the second orthologue in the orthology relationship.

Methods in org.biojava.bio.program.homologene with parameters of type SimilarityType
`OrthoPair` | `SimpleHomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)`
`OrthoPair` | `HomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)` Create a computed orthology entry.

Constructors in org.biojava.bio.program.homologene with parameters of type SimilarityType
`OrthoPairFilter.BySimilarityType(SimilarityType type)`
`SimpleOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)` constructor for the computed form of an orthology relationship.

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