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## Uses of Package
org.biojava.bio.structure

Packages that use org.biojava.bio.structure
org.biojava.bio.program.das.dasstructure | request a protein structure via DAS
org.biojava.bio.structure | Interfaces and classes for protein structure (PDB).
org.biojava.bio.structure.align | Classes for the super-imposition of structures.
org.biojava.bio.structure.align.helper | Helper classes for structural alignment.
org.biojava.bio.structure.align.pairwise | Classes for the pairwise alignment of structures.
org.biojava.bio.structure.gui | A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.bio.structure.gui.events | Some event classes for the protein structure GUIs.
org.biojava.bio.structure.gui.util | Some utility classes for the protein structure GUIs.
org.biojava.bio.structure.io | Input and Output of Structures
org.biojava.bio.structure.io.mmcif | Input and Output of mmcif files
org.biojava.bio.structure.server | classes for easier management of PDB installations

Classes in org.biojava.bio.structure used by org.biojava.bio.program.das.dasstructure
Structure Interface for a structure object.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure
AminoAcid A `Group` that represents an AminoAcid.
Atom A simple interface for an Atom.
Author Describes author attributes for author information in a PDB file.
Chain Defines the interface for a Chain.
Compound Created by IntelliJ IDEA.
DBRef A class to represent database cross references.
Group This is the data structure for a single Group of atoms.
HetatomImpl Generic Implementation of a Group interface.
JournalArticle PDB-specific
PDBHeader A class that contains PDB Header information.
PDBRecord An interface implemented by all classes that represent PDB records
SSBond A simple bean to store disulfid bridge information, the SSBOND records in the PDB files.
Structure Interface for a structure object.
StructureException An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align
Atom A simple interface for an Atom.
Structure Interface for a structure object.
StructureException An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.helper
Atom A simple interface for an Atom.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.align.pairwise
Atom A simple interface for an Atom.
Structure Interface for a structure object.
StructureException An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui
Structure Interface for a structure object.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.events
Structure Interface for a structure object.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.gui.util
Chain Defines the interface for a Chain.
Structure Interface for a structure object.
StructureException An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io
Chain Defines the interface for a Chain.
Group This is the data structure for a single Group of atoms.
Structure Interface for a structure object.
StructureException An exception during the parsing of a PDB file.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.io.mmcif
Structure Interface for a structure object.

Classes in org.biojava.bio.structure used by org.biojava.bio.structure.server
PDBHeader A class that contains PDB Header information.
Structure Interface for a structure object.

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