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## Uses of Interface
org.biojava.bio.alignment.AlignmentElement

Packages that use AlignmentElement
org.biojava.bio.alignment | Classes to generate and describe sequence alignments.

Uses of AlignmentElement in org.biojava.bio.alignment

Classes in org.biojava.bio.alignment that implement AlignmentElement
`class` | `SimpleAlignmentElement` SimpleSimpleAlignment is a simple implementation of AlignmentElement.

Methods in org.biojava.bio.alignment that return AlignmentElement
`protected AlignmentElement` | `FlexibleAlignment.getAE(Object label)`

Methods in org.biojava.bio.alignment with parameters of type AlignmentElement
`void` | `FlexibleAlignment.addSequence(AlignmentElement ae)` add a new a alignment usings a location to the reference sequence.
`void` | `ARAlignment.addSequence(AlignmentElement ae)`

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