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## Package org.biojava.bio.structure.align.pairwise

Classes for the pairwise alignment of structures.

See:
Description

Interface Summary
Alignable |

Class Summary
AligNPE |
AltAligComparator | a comparator to sort AlternativeAlignments based on their number of equivalent residues and RMSD.
AlternativeAlignment | Implements a class which handles one possible (alternative) solution.
FragmentJoiner | Joins the initial Fragments together to larger Fragments
FragmentPair | a pair of fragments of two protein structures
Gotoh | a class to perform Gotoh algorithm
StrCompAlignment |

## Package org.biojava.bio.structure.align.pairwise Description

Classes for the pairwise alignment of structures.

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