Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD

## org.biojava.bio.gui.sequence
Class SequencePanelWrapper

    java.lang.Object
      java.awt.Component
          java.awt.Container
              javax.swing.JComponent
                  javax.swing.JPanel
                      org.biojava.bio.gui.sequence.SequencePanelWrapper

All Implemented Interfaces:
  ImageObserver, MenuContainer, Serializable, Accessible

    public class SequencePanelWrapper

extends JPanel

Handles multiple SequencePanels and Ranges so that a Sequence can be wrapped over more than one line on screen. This is particularly useful for viewing Protein sequences that would be viewed at a single residue resolution. The interface is very similar to that of the SequencePanels that it wraps

Since:
  1.5
Author:
  Mark Southern
See Also:
  `SequencePanel`, Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel
`JPanel.AccessibleJPanel`

Nested classes/interfaces inherited from class javax.swing.JComponent
`JComponent.AccessibleJComponent`

Nested classes/interfaces inherited from class java.awt.Container
`Container.AccessibleAWTContainer`

Nested classes/interfaces inherited from class java.awt.Component
`Component.AccessibleAWTComponent, Component.BltBufferStrategy, Component.FlipBufferStrategy`

Field Summary
`protected SequencePanel[]` | `seqPanels`

Fields inherited from class javax.swing.JComponent
`accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW`

Fields inherited from class java.awt.Component
`BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT`

Fields inherited from interface java.awt.image.ImageObserver
`ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH`

Constructor Summary
`SequencePanelWrapper()` Creates a new instance of WrappedSequencePanel

Method Summary
`void` | `addSequenceViewerListener(SequenceViewerListener l)`
`void` | `addSequenceViewerMotionListener(SequenceViewerMotionListener l)`
`int` | `getDirection()`
`RangeLocation` | `getRange()`
`SequenceRenderer` | `getRenderer()`
`RenderingHints` | `getRenderingHints()`
`double` | `getScale()`
`Sequence` | `getSequence()`
`TrackLayout` | `getTrackLayout()`
`int` | `getWrap()`
`protected void` | `initComponents()`
`protected boolean` | `isActive()`
`void` | `paint(Graphics g)`
`void` | `paintComponent(Graphics g)`
`protected void` | `refreshSequencePanels()`
`void` | `removeSequenceViewerListener(SequenceViewerListener l)`
`void` | `removeSequenceViewerMotionListener(SequenceViewerMotionListener l)`
`void` | `resizeAndValidate()`
`void` | `setDirection(int direction)`
`void` | `setFont(Font f)`
`void` | `setRange(RangeLocation loc)`
`void` | `setRenderer(SequenceRenderer renderer)`
`void` | `setRenderingHints(RenderingHints hints)`
`void` | `setScale(double scale)`
`void` | `setSequence(Sequence seq)`
`void` | `setTrackLayout(TrackLayout tl)`
`void` | `setWrap(int w)`

Methods inherited from class javax.swing.JPanel
`getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI`

Methods inherited from class javax.swing.JComponent
`addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update`

Methods inherited from class java.awt.Container
`add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree`

Methods inherited from class java.awt.Component
`action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Field Detail

### seqPanels

    protected SequencePanel[] seqPanels

Constructor Detail

### SequencePanelWrapper

    public SequencePanelWrapper()

  Creates a new instance of WrappedSequencePanel

Method Detail

### initComponents

    protected void initComponents()

### setTrackLayout

    public void setTrackLayout(TrackLayout tl)

### getTrackLayout

    public TrackLayout getTrackLayout()

### isActive

    protected boolean isActive()

### setScale

    public void setScale(double scale)

### getScale

    public double getScale()

### setDirection

    public void setDirection(int direction)

### getDirection

    public int getDirection()

### setWrap

    public void setWrap(int w)

### getWrap

    public int getWrap()

### setRenderingHints

    public void setRenderingHints(RenderingHints hints)

### getRenderingHints

    public RenderingHints getRenderingHints()

### setRenderer

    public void setRenderer(SequenceRenderer renderer)

### getRenderer

    public SequenceRenderer getRenderer()

### setSequence

    public void setSequence(Sequence seq)

### getSequence

    public Sequence getSequence()

### setRange

    public void setRange(RangeLocation loc)

### getRange

    public RangeLocation getRange()

### resizeAndValidate

    public void resizeAndValidate()

### refreshSequencePanels

    protected void refreshSequencePanels()

### addSequenceViewerListener

    public void addSequenceViewerListener(SequenceViewerListener l)

### removeSequenceViewerListener

    public void removeSequenceViewerListener(SequenceViewerListener l)

### addSequenceViewerMotionListener

    public void addSequenceViewerMotionListener(SequenceViewerMotionListener l)

### removeSequenceViewerMotionListener

    public void removeSequenceViewerMotionListener(SequenceViewerMotionListener l)

### setFont

    public void setFont(Font f)

  Overrides:
    `setFont` in class `JComponent`

### paint

    public void paint(Graphics g)

  Overrides:
    `paint` in class `JComponent`

### paintComponent

    public void paintComponent(Graphics g)

  Overrides:
    `paintComponent` in class `JComponent`

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD