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## Uses of Class
org.biojava.bio.structure.align.helper.AligMatEl

Packages that use AligMatEl
org.biojava.bio.structure.align.pairwise | Classes for the pairwise alignment of structures.

Uses of AligMatEl in org.biojava.bio.structure.align.pairwise

Methods in org.biojava.bio.structure.align.pairwise that return AligMatEl
`AligMatEl[][]` | `StrCompAlignment.getAligMat()`
`AligMatEl[][]` | `Alignable.getAligMat()`
`AligMatEl` | `StrCompAlignment.getAligMat(int i, int j)`

Methods in org.biojava.bio.structure.align.pairwise with parameters of type AligMatEl
`void` | `StrCompAlignment.setAligMat(AligMatEl[][] al)`
`void` | `Alignable.setAligMat(AligMatEl[][] alignmentMatrix)`
`void` | `StrCompAlignment.setAligMat(int i, int j, AligMatEl el)`

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