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## org.biojava.bio.dp.twohead
Class DPInterpreter

    java.lang.Object
      org.biojava.bio.dp.twohead.DPInterpreter

All Implemented Interfaces:
  Serializable, CellCalculatorFactory

    public class DPInterpreter

extends Object
implements CellCalculatorFactory, Serializable

Author:
  Matthew Pocock, Thomas Down
See Also:
  Serialized Form

Nested Class Summary
`static class` | `DPInterpreter.Maker`

Constructor Summary
`DPInterpreter(DP dp)`

Method Summary
`CellCalculator` | `backwards(ScoreType scoreType)`
`CellCalculator` | `forwards(ScoreType scoreType)`
`CellCalculator` | `viterbi(ScoreType scoreType, BackPointer terminal)`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### DPInterpreter

    public DPInterpreter(DP dp)

Method Detail

### forwards

    public CellCalculator forwards(ScoreType scoreType)
                            throws IllegalSymbolException,
                                   IllegalAlphabetException,
                                   IllegalTransitionException

  Specified by:
    `forwards` in interface `CellCalculatorFactory`
  Throws:
    `IllegalSymbolException`
    `IllegalAlphabetException`
    `IllegalTransitionException`

### backwards

    public CellCalculator backwards(ScoreType scoreType)
                             throws IllegalSymbolException,
                                    IllegalAlphabetException,
                                    IllegalTransitionException

  Specified by:
    `backwards` in interface `CellCalculatorFactory`
  Throws:
    `IllegalSymbolException`
    `IllegalAlphabetException`
    `IllegalTransitionException`

### viterbi

    public CellCalculator viterbi(ScoreType scoreType,
                                  BackPointer terminal)
                           throws IllegalSymbolException,
                                  IllegalAlphabetException,
                                  IllegalTransitionException

  Specified by:
    `viterbi` in interface `CellCalculatorFactory`
  Throws:
    `IllegalSymbolException`
    `IllegalAlphabetException`
    `IllegalTransitionException`

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