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## Uses of Interface
org.biojava.bio.program.gff.GFFDocumentHandler

Packages that use GFFDocumentHandler
org.biojava.bio.program.gff | GFF manipulation.

Uses of GFFDocumentHandler in org.biojava.bio.program.gff

Classes in org.biojava.bio.program.gff that implement GFFDocumentHandler
`class` | `GFFFilterer` An object that filters a stream of GFF, forwarding some GFFRecords to a listening GFFDocumentHandler, and dropping others.
`class` | `GFFWriter` Listens to a stream of GFF events and writes the lines to a PrintWriter.

Methods in org.biojava.bio.program.gff that return GFFDocumentHandler
`GFFDocumentHandler` | `GFFEntrySet.getAddHandler()` Get the GFFDocumentHandler for adding to this set.

Methods in org.biojava.bio.program.gff with parameters of type GFFDocumentHandler
`protected GFFRecord` | `GFFParser.createRecord(GFFDocumentHandler handler, List aList, String rest, String comment)` Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler.
`protected void` | `SequencesAsGFF.doPreProcessSequence(Sequence seq, GFFDocumentHandler handler, String id)` Emit any per-sequence header information.
`protected void` | `SequencesAsGFF.doProcessFeature(Feature feature, GFFDocumentHandler handler, String id)` Internal method to process an individual Feature.
`protected void` | `SequencesAsGFF.doProcessSequence(Sequence seq, GFFDocumentHandler handler, String id)` Internal method to process an individual Sequence.
`void` | `GFFParser.parse(BufferedReader bReader, GFFDocumentHandler handler)` Informs handler of each line of gff read from bReader.
`void` | `GFFParser.parse(BufferedReader bReader, GFFDocumentHandler handler, String locator)` Informs handler of each line of GFF read from bReader
`void` | `SequencesAsGFF.processDB(SequenceDB seqDB, GFFDocumentHandler handler)` Process all Sequences within a SequenceDB, informing handler of any suitable features.
`void` | `SequencesAsGFF.processSequence(Sequence seq, GFFDocumentHandler handler)` Process an individual Sequence, informing handler of any suitable features.
`void` | `GFFEntrySet.streamRecords(GFFDocumentHandler handler)` Write all records in this set out to a handler.

Constructors in org.biojava.bio.program.gff with parameters of type GFFDocumentHandler
`GFFFilterer(GFFDocumentHandler handler, GFFRecordFilter filter)` Create a new GFFFilterer that will forward to handler everything that filter accepts.

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