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## Uses of Interface
org.biojava.bio.taxa.TaxonFactory

Packages that use TaxonFactory
org.biojava.bio.seq.db.biosql | General purpose Sequence storage in a relational database.
org.biojava.bio.seq.io | Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.bio.taxa | Taxonomy object for representing species information.

Uses of TaxonFactory in org.biojava.bio.seq.db.biosql

Methods in org.biojava.bio.seq.db.biosql with parameters of type TaxonFactory
`static void` | `TaxonSQL.automaticUpdate(Connection conn, DBHelper helper, TaxonFactory factory, File delnodes, File merged)` Deprecated. This method tries to perform a complete update according to the given `TaxonFactory`, which already contains the newes taxa and the files available at the NCBI-FTP-Site.

Uses of TaxonFactory in org.biojava.bio.seq.io

Constructors in org.biojava.bio.seq.io with parameters of type TaxonFactory
`OrganismParser.Factory(SequenceBuilderFactory delegateFactory, TaxonFactory taxonFactory, TaxonParser taxonParser, String sciNameKey, String commonNameKey, String ncbiTaxonKey)`
`OrganismParser(SequenceBuilder delegate, TaxonFactory taxonFactory, TaxonParser taxonParser, String sciNameKey, String commonNameKey, String ncbiTaxonKey)` Deprecated.

Uses of TaxonFactory in org.biojava.bio.taxa

Classes in org.biojava.bio.taxa that implement TaxonFactory
`class` | `SimpleTaxonFactory` Deprecated. replaced by classes in `org.biojavax.bio.taxa`
`class` | `WeakTaxonFactory` Deprecated. replaced by classes in `org.biojavax.bio.taxa`

Methods in org.biojava.bio.taxa with parameters of type TaxonFactory
`Taxon` | `TaxonParser.parse(TaxonFactory taxonFactory, String taxonString)` Deprecated. Convert a stringified Taxon into a Taxon instance.
`Taxon` | `EbiFormat.parse(TaxonFactory taxonFactory, String taxonString)` Deprecated.

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