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java.lang.Objectorg.biojava.utils.AbstractChangeable
org.biojava.bio.dist.AbstractDistribution
org.biojava.bio.dist.SimpleDistribution
org.biojava.bio.dist.UntrainableDistribution
public class UntrainableDistribution
A distribution which does not interact with the training framework.
This class behaves in exactly the same manner as SimpleDistribution,
except that it has a no-op registerWithTrainer
method.
It is useful for building Markov models where you wish to train only
a subset of the Distributions.
Nested Class Summary |
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Nested classes/interfaces inherited from class org.biojava.bio.dist.SimpleDistribution |
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SimpleDistribution.Trainer |
Nested classes/interfaces inherited from interface org.biojava.bio.dist.Distribution |
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Distribution.NullModelForwarder |
Field Summary |
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Fields inherited from class org.biojava.bio.dist.AbstractDistribution |
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nullModelForwarder |
Fields inherited from interface org.biojava.bio.dist.Distribution |
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NULL_MODEL, WEIGHTS |
Constructor Summary | |
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UntrainableDistribution(FiniteAlphabet alpha)
Construct a new untrainable distribution over the specified alphabet. |
Method Summary | |
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void |
registerWithTrainer(DistributionTrainerContext dtc)
Register an SimpleDistribution.Trainer instance as the trainer for this distribution. |
Methods inherited from class org.biojava.bio.dist.SimpleDistribution |
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getAlphabet, getNullModel, getWeightImpl, getWeights, hasWeights, setNullModelImpl, setWeightImpl |
Methods inherited from class org.biojava.bio.dist.AbstractDistribution |
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equals, getChangeSupport, getWeight, hashCode, sampleSymbol, setNullModel, setWeight |
Methods inherited from class org.biojava.utils.AbstractChangeable |
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addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener |
Methods inherited from class java.lang.Object |
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clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.biojava.utils.Changeable |
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addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Constructor Detail |
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public UntrainableDistribution(FiniteAlphabet alpha)
alpha
- the finite alphabet to be overMethod Detail |
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public void registerWithTrainer(DistributionTrainerContext dtc)
SimpleDistribution
registerWithTrainer
in interface Distribution
registerWithTrainer
in class SimpleDistribution
dtc
- the context to register with
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