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Packages that use SearchListener | |
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org.biojava.bio.program.ssaha | SSAHA sequence searching API. |
Uses of SearchListener in org.biojava.bio.program.ssaha |
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Classes in org.biojava.bio.program.ssaha that implement SearchListener | |
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class |
HitMerger
A listener that merges overlapping hits and culls all hits under a given length. |
static class |
SearchListener.Echo
A SearchListener that prints events out to a PrintStream. |
static class |
SearchListener.FilterByLength
A simple listener that filters out all hits that are too short. |
static class |
SearchListener.Tee
A SearchListener that passes events on to two delegate listeners. |
static class |
SearchListener.Wrapper
A simple wrapper implementation. |
Methods in org.biojava.bio.program.ssaha with parameters of type SearchListener | |
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void |
CompactedDataStore.fireHits(int word,
int offset,
SearchListener listener)
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void |
DataStore.search(String id,
SymbolList symList,
SearchListener listener)
Search the DataStore with a symbol list. |
void |
CompactedDataStore.search(String seqID,
SymbolList symList,
SearchListener listener)
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Constructors in org.biojava.bio.program.ssaha with parameters of type SearchListener | |
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HitMerger(SearchListener delegate,
int minLength)
Build a new HitMerger that will pass events on to a delegate. |
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SearchListener.FilterByLength(SearchListener delegate,
int minLength)
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SearchListener.Tee(SearchListener d1,
SearchListener d2)
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SearchListener.Wrapper(SearchListener delegate)
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