org.biojava.bio.program.gff
Class GFFErrorHandler.AbortErrorHandler
java.lang.Object
org.biojava.bio.program.gff.GFFErrorHandler.AbortErrorHandler
- All Implemented Interfaces:
- GFFErrorHandler
- Enclosing interface:
- GFFErrorHandler
public static class GFFErrorHandler.AbortErrorHandler
- extends Object
- implements GFFErrorHandler
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
GFFErrorHandler.AbortErrorHandler
public GFFErrorHandler.AbortErrorHandler()
invalidStart
public int invalidStart(String token)
throws ParserException
- Description copied from interface:
GFFErrorHandler
- The `start' field of the GFF entry was not a valid value.
- Specified by:
invalidStart
in interface GFFErrorHandler
- Parameters:
token
- The start token found.
- Returns:
- A parsed value, if this is possible
- Throws:
ParserException
- If parsing should be aborted
invalidEnd
public int invalidEnd(String token)
throws ParserException
- Description copied from interface:
GFFErrorHandler
- The `end' field of the GFF entry was not a valid value.
- Specified by:
invalidEnd
in interface GFFErrorHandler
- Parameters:
token
- The end token found.
- Returns:
- A parsed value, if this is possible
- Throws:
ParserException
- If parsing should be aborted
invalidScore
public double invalidScore(String token)
throws ParserException
- Description copied from interface:
GFFErrorHandler
- The `score' field of the GFF entry was not a valid value.
- Specified by:
invalidScore
in interface GFFErrorHandler
- Parameters:
token
- The score token found.
- Returns:
- A parsed value, if this is possible
- Throws:
ParserException
- If parsing should be aborted
invalidFrame
public int invalidFrame(String token)
throws ParserException
- Description copied from interface:
GFFErrorHandler
- The `frame' field of the GFF entry was not a valid value.
- Specified by:
invalidFrame
in interface GFFErrorHandler
- Parameters:
token
- The frame token found.
- Returns:
- A parsed value, if this is possible
- Throws:
ParserException
- If parsing should be aborted
invalidStrand
public StrandedFeature.Strand invalidStrand(String token)
throws ParserException
- Description copied from interface:
GFFErrorHandler
- The `strand' field of the GFF entry was not a valid value.
- Specified by:
invalidStrand
in interface GFFErrorHandler
- Parameters:
token
- The strand token found.
- Returns:
- A parsed value, if this is possible
- Throws:
ParserException
- If parsing should be aborted