Package org.biojava.bio.seq.homol

The classes and interfaces for defining sequence similarity and honology.

See:
          Description

Interface Summary
Homology Signifies that two or more features are homologous.
HomologyDB  
HomologyFeature  
SimilarityPairFeature SimilarityPairFeature describes a pairwise similarity between two nucleotide sequences (as it extends StrandedFeature).
 

Class Summary
HomologyFeature.Template  
SimilarityPairFeature.EmptyPairwiseAlignment EmptyPairwiseAlignment empty pairwise alignment which has labels to empty symbol lists.
SimilarityPairFeature.Template Template for construction of SimilarityPairFeatures.
SimpleHomology A no-frills implementation of Homology.
 

Package org.biojava.bio.seq.homol Description

The classes and interfaces for defining sequence similarity and honology.