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public interface FramedFeature
Title: FramedFeature.
Description: An feature that includes the concept of frame by extending stranded.
Copyright: Copyright (c) 2001
Nested Class Summary | |
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static class |
FramedFeature.ReadingFrame
A singleton to hold the frame information |
static class |
FramedFeature.Template
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Nested classes/interfaces inherited from interface org.biojava.bio.seq.StrandedFeature |
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StrandedFeature.Strand |
Nested classes/interfaces inherited from interface org.biojava.bio.seq.Feature |
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Feature.ByLocationComparator |
Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureHolder |
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FeatureHolder.EmptyFeatureHolder |
Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable |
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Annotatable.AnnotationForwarder |
Field Summary | |
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static FramedFeature.ReadingFrame |
FRAME_0
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static FramedFeature.ReadingFrame |
FRAME_1
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static FramedFeature.ReadingFrame |
FRAME_2
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Fields inherited from interface org.biojava.bio.seq.StrandedFeature |
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NEGATIVE, POSITIVE, STRAND, UNKNOWN |
Fields inherited from interface org.biojava.bio.seq.Feature |
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byLocationOrder, LOCATION, PROPERTY_DATA_KEY, SOURCE, SOURCETERM, TYPE, TYPETERM |
Fields inherited from interface org.biojava.bio.seq.FeatureHolder |
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EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA |
Fields inherited from interface org.biojava.bio.Annotatable |
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ANNOTATION |
Method Summary | |
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FramedFeature.ReadingFrame |
getReadingFrame()
return the reading frame of the feature. |
StrandedFeature.Strand |
getStrand()
Retrieve the strand that this feature lies upon. |
Methods inherited from interface org.biojava.bio.seq.StrandedFeature |
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getSymbols, setStrand |
Methods inherited from interface org.biojava.bio.seq.Feature |
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features, getLocation, getParent, getSequence, getSource, getSourceTerm, getType, getTypeTerm, makeTemplate, setLocation, setSource, setSourceTerm, setType, setTypeTerm |
Methods inherited from interface org.biojava.bio.seq.FeatureHolder |
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containsFeature, countFeatures, createFeature, filter, filter, getSchema, removeFeature |
Methods inherited from interface org.biojava.utils.Changeable |
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addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Methods inherited from interface org.biojava.bio.Annotatable |
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getAnnotation |
Methods inherited from interface org.biojava.utils.Changeable |
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addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener |
Field Detail |
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static final FramedFeature.ReadingFrame FRAME_0
static final FramedFeature.ReadingFrame FRAME_1
static final FramedFeature.ReadingFrame FRAME_2
Method Detail |
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FramedFeature.ReadingFrame getReadingFrame()
StrandedFeature.Strand getStrand()
StrandedFeature
This will be one of StrandedFeature.POSITIVE or NEGATIVE.
getStrand
in interface StrandedFeature
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