org.biojava.bio.program.homologene
Class AbstractOrthoPairSet

java.lang.Object
  extended by org.biojava.utils.AbstractChangeable
      extended by org.biojava.bio.program.homologene.AbstractOrthoPairSet
All Implemented Interfaces:
OrthoPairSet, Changeable
Direct Known Subclasses:
SimpleOrthoPairSet

public abstract class AbstractOrthoPairSet
extends AbstractChangeable
implements OrthoPairSet

represents the Homologene Group.


Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biojava.bio.program.homologene.OrthoPairSet
OrthoPairSet.Iterator
 
Field Summary
 
Fields inherited from interface org.biojava.bio.program.homologene.OrthoPairSet
MODIFY
 
Constructor Summary
AbstractOrthoPairSet()
           
 
Method Summary
 OrthoPairSet filter(OrthoPairFilter filter)
          filter an OrthoPairSet
 
Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.biojava.bio.program.homologene.OrthoPairSet
addOrthoPair, getMinIdentity, getName, getTaxa, iterator, removeOrthoPair, setName, size
 

Constructor Detail

AbstractOrthoPairSet

public AbstractOrthoPairSet()
Method Detail

filter

public OrthoPairSet filter(OrthoPairFilter filter)
Description copied from interface: OrthoPairSet
filter an OrthoPairSet

Specified by:
filter in interface OrthoPairSet