symbol
Class WindowCount
java.lang.Object
symbol.WindowCount
public class WindowCount
- extends Object
Title: WindowCount
Description: A program to find the distribution of nmers in a fasta
library
Copyright: Copyright (c) 2001
Company: AgResearch
- Version:
- 1.0
- Author:
- Mark Schreiber, Matthew Pocock
Method Summary |
static void |
main(String[] args)
|
static void |
output(Double d,
org.biojava.bio.symbol.AtomicSymbol s)
|
static org.biojava.bio.seq.db.SequenceDB |
readSequenceDB(File seqFile,
org.biojava.bio.symbol.Alphabet alpha)
Create a sequence database from a fasta file. |
static void |
usage()
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
WindowCount
public WindowCount()
main
public static void main(String[] args)
readSequenceDB
public static org.biojava.bio.seq.db.SequenceDB readSequenceDB(File seqFile,
org.biojava.bio.symbol.Alphabet alpha)
throws Exception
- Create a sequence database from a fasta file.
- Throws:
Exception
output
public static void output(Double d,
org.biojava.bio.symbol.AtomicSymbol s)
usage
public static void usage()