gff
Class GenbankToGffFasta
java.lang.Object
gff.GenbankToGffFasta
public class GenbankToGffFasta
- extends Object
Converts a Genbank file into a fasta file for the sequence and a GFF file for
the features.
This program demonstrates how to read in a Genbank file, how to write a fasta
file and how to write GFF.
Use:
java GenbankToGffFasta genbankFile fastaOut gffOut
Based heavily off of EmblToGffFasta by Matthew Pocock. It was pretty much a
global replace of 'embl' with 'genbank'.
- Author:
- Greg Cox
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
GenbankToGffFasta
public GenbankToGffFasta()
main
public static void main(String[] args)
throws Exception
- Throws:
Exception