org.biojava.bio.program.ssaha
Interfaces 
DataStore
DataStoreFactory
SearchListener
SequenceStreamer
Classes 
CompactedDataStore
CompactedDataStoreFactory
HitMerger
MappedDataStoreFactory
NIODataStoreFactory
SearchListener.Echo
SearchListener.FilterByLength
SearchListener.Tee
SearchListener.Wrapper
SequenceStreamer.FileStreamer
SequenceStreamer.SequenceDBStreamer
Exceptions 
SearchException