class Bio::Muscle
Bio::Muscle is a wrapper class to execute MUSCLE.
Please refer documents in bio/apple/muscle.rb for references.
Constants
- DEFAULT_PARSER
Data class for fasta-formatted multiple sequence alignment data, which is simply multiple entiries of fasta formatted sequences.
- DEFAULT_PROGRAM
default program name
Private Instance Methods
_option_input_file(fn)
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generates options specifying input filename. returns an array of string
# File lib/bio/appl/muscle.rb, line 41 def _option_input_file(fn) [ '-in', fn ] end
_option_output_file(fn)
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generates options specifying output filename. returns an array of string
# File lib/bio/appl/muscle.rb, line 47 def _option_output_file(fn) [ '-out', fn ] end