| Class Specialization Dna5Q Alphabet for DNA plus phred quality including 'N' character.
Simple Type
SimpleType
Dna5Q
Dna5Q Remarks The ValueSize of Dna5Q is 5. The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'T' = 3. The 'N' character ("unkown nucleotide") is encoded by 4. Objects of type Dna5 can be converted to various other types and vice versa. Dna5Q is typedef for SimpleType<char,Dna5Q_>, while Dna5Q_ is a helper specialization tag class. Specialization of SimpleType Implements Simple Type Metafunctions
IsSimple | Tests type to be simple. (SimpleType)
Spec | The spec of a class. (SimpleType)
Value | Type of the items in the container. (SimpleType)
Functions
assign | Assigns one object to another object. (SimpleType)
assign | Assigns one object to another object. (SimpleType)
assignQualityValue | Assign quality to a character from an alphabet with integrated quality.
ordValue | Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType)
See Also DnaQ, ValueSize SeqAn - Sequence Analysis Library - www.seqan.de

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