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java.lang.Objectorg.biojava.bio.program.homologene.HomologeneTools
public class HomologeneTools
Homologene is a NCBI dataset that curates sets of orthologues from the reference model ogranisms.
This class is a Collection of methods for handling data from the Homologene dataset.
Constructor Summary | |
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HomologeneTools()
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Method Summary | |
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static Taxon |
createTaxon(int taxonID,
String description)
add a Taxon |
static Taxon |
getTaxon(int taxonID)
get the Taxon corresponding to this Taxon ID |
static void |
instantiateDB(URL url,
HomologeneBuilder builder)
instantiate a HomologeneDB. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public HomologeneTools()
Method Detail |
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public static Taxon getTaxon(int taxonID)
public static Taxon createTaxon(int taxonID, String description) throws DuplicateTaxonException
DuplicateTaxonException
public static void instantiateDB(URL url, HomologeneBuilder builder) throws OperationNotSupportedException, FileNotFoundException, IOException
Currently, only file protocol support is available.
OperationNotSupportedException
FileNotFoundException
IOException
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