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Packages that use RegistryException | |
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org.biojava.bio.program.das | Development client for the Distributed Annotation System. |
org.biojava.bio.seq.db.biofetch | Client for the OBDA BioFetch protocol. |
org.biojava.bio.seq.db.biosql | General purpose Sequence storage in a relational database. |
org.biojava.bio.seq.db.flat | Support for OBDA flatfile databases. |
org.biojava.directory | Open Bio Sequence Database Access (OBDA) registry support. |
Uses of RegistryException in org.biojava.bio.program.das |
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Methods in org.biojava.bio.program.das that throw RegistryException | |
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SequenceDBLite |
DASSequenceDBProvider.getSequenceDB(Map config)
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Uses of RegistryException in org.biojava.bio.seq.db.biofetch |
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Methods in org.biojava.bio.seq.db.biofetch that throw RegistryException | |
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SequenceDBLite |
BioFetchSequenceDBProvider.getSequenceDB(Map config)
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Uses of RegistryException in org.biojava.bio.seq.db.biosql |
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Methods in org.biojava.bio.seq.db.biosql that throw RegistryException | |
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SequenceDBLite |
BioSQLSequenceDBProvider.getSequenceDB(Map config)
Deprecated. |
Uses of RegistryException in org.biojava.bio.seq.db.flat |
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Methods in org.biojava.bio.seq.db.flat that throw RegistryException | |
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SequenceDBLite |
FlatSequenceDBProvider.getSequenceDB(Map config)
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Uses of RegistryException in org.biojava.directory |
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Subclasses of RegistryException in org.biojava.directory | |
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class |
ProviderNotFoundException
ProviderNotFoundException is thrown when a sequence
database provider can not be located. |
Methods in org.biojava.directory that throw RegistryException | |
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void |
RegistryConfiguration.Composite.addBottomConfig(RegistryConfiguration newConfig)
Add a configuration as the most default place to look. |
void |
RegistryConfiguration.Composite.addTopConfig(RegistryConfiguration newConfig)
Add a configuration as the most authoritative place to look. |
Map |
RegistryConfiguration.getConfiguration()
getConfiguration returns a mapping of registry
database names to collections of tag-value pairs. |
SequenceDBLite |
Registry.getDatabase(String dbName)
getDatabase retrieves a database instance known by
a name String . |
SequenceDBLite |
SequenceDBProvider.getSequenceDB(Map config)
Get a sequence database. |
static RegistryConfiguration |
OBDARegistryParser.parseRegistry(BufferedReader in,
String locator)
parseRegistry parses an Open Bioinformatics Database
Access (OBDA) configuration file. |
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