|
||||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |
See:
Description
Interface Summary | |
---|---|
AminoAcid |
A Group that represents an AminoAcid. |
Atom | A simple interface for an Atom. |
Chain | Defines the interface for a Chain. |
Group | This is the data structure for a single Group of atoms. |
PDBRecord | An interface implemented by all classes that represent PDB records |
Structure | Interface for a structure object. |
Class Summary | |
---|---|
AlphaCTools | AlphaCTools is a collection of static convenience methods for dealing with Alpha Carbon Backbone Phi / Psi angles. |
AminoAcidImpl | AminoAcid inherits most from Hetatom. |
AtomImpl | Implementation of an Atom of a PDB file. |
AtomIterator | an iterator over all atoms of a structure / group. |
Author | Describes author attributes for author information in a PDB file. |
Calc | utility operations on Atoms, AminoAcids, etc. |
ChainImpl | A Chain in a PDB file. |
Compound | Created by IntelliJ IDEA. |
DBRef | A class to represent database cross references. |
GroupIterator | An iterator over all groups of a structure. |
GroupType | contains only the static declaration of which types of Groups are available |
HetatomImpl | Generic Implementation of a Group interface. |
JournalArticle | PDB-specific |
Mutator | A class that can change one amino acid to another. |
NucleotideImpl | A nucleotide group is almost the same as a Hetatm group. |
PDBHeader | A class that contains PDB Header information. |
SSBond | A simple bean to store disulfid bridge information, the SSBOND records in the PDB files. |
StandardAminoAcid | A class that provides a set of standard amino acids. |
StructureImpl | Implementation of a PDB Structure. |
StructureTools | A class that provides some tool methods. |
SVDSuperimposer | A class that calculates the superimposition between two sets of atoms inspired by the biopython SVDSuperimposer class... |
Exception Summary | |
---|---|
StructureException | An exception during the parsing of a PDB file. |
Interfaces and classes for protein structure (PDB).
Structure | Chain | Group | AtomLearn more how to work with groups.
For more documentation on how to work with the Structure API please see http://biojava.org/wiki/BioJava:CookBook#Protein_Structure
|
||||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |