org.biojava.bio.program.gff
Class GFFRecordFilter.SequenceFilter

java.lang.Object
  extended by org.biojava.bio.program.gff.GFFRecordFilter.SequenceFilter
All Implemented Interfaces:
GFFRecordFilter
Enclosing interface:
GFFRecordFilter

public static class GFFRecordFilter.SequenceFilter
extends Object
implements GFFRecordFilter

Implementation of GFFRecordFilter that accepts records based upon the sequence name.

Author:
Matthew Pocock

Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biojava.bio.program.gff.GFFRecordFilter
GFFRecordFilter.AcceptAll, GFFRecordFilter.FeatureFilter, GFFRecordFilter.FrameFilter, GFFRecordFilter.NotFilter, GFFRecordFilter.SequenceFilter, GFFRecordFilter.SourceFilter, GFFRecordFilter.StrandFilter
 
Field Summary
 
Fields inherited from interface org.biojava.bio.program.gff.GFFRecordFilter
ACCEPT_ALL
 
Constructor Summary
GFFRecordFilter.SequenceFilter()
           
GFFRecordFilter.SequenceFilter(String seqName)
           
 
Method Summary
 boolean accept(GFFRecord record)
          Return whether or not to accept record.
 String getSeqName()
          Retrieve the current sequence name.
 void setSeqName(String seqName)
          Set the sequence name to seqName.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

GFFRecordFilter.SequenceFilter

public GFFRecordFilter.SequenceFilter()

GFFRecordFilter.SequenceFilter

public GFFRecordFilter.SequenceFilter(String seqName)
Method Detail

getSeqName

public String getSeqName()
Retrieve the current sequence name.

Returns:
the sequence name String

setSeqName

public void setSeqName(String seqName)
Set the sequence name to seqName.

Parameters:
seqName - the new sequence name to match

accept

public boolean accept(GFFRecord record)
Description copied from interface: GFFRecordFilter
Return whether or not to accept record.

Specified by:
accept in interface GFFRecordFilter
Parameters:
record - the GFFRecord to filter
Returns:
record. getSeqName() == this.getSeqName()