module Bio::Alignment
About Bio::Alignment¶ ↑
Bio::Alignment is a namespace of classes/modules for multiple sequence alignment.
Multiple alignment container classes¶ ↑
Bio::Alignment::OriginalAlignment¶ ↑
Bio::Alignment::SequenceArray¶ ↑
Bio::Alignment::SequenceHash¶ ↑
Bio::Alignment::Site¶ ↑
Modules¶ ↑
Bio::Alignment::EnumerableExtension¶ ↑
Mix-in for classes included Enumerable.
Bio::Alignment::ArrayExtension¶ ↑
Mix-in for Array or Array-like classes.
Bio::Alignment::HashExtension¶ ↑
Mix-in for Hash or Hash-like classes.
Bio::Alignment::SiteMethods¶ ↑
Bio::Alignment::PropertyMethods¶ ↑
Bio::Alignment::GAP¶ ↑
Compatibility from older BioRuby¶ ↑
Public Class Methods
new(*arg)
click to toggle source
creates a new Bio::Alignment::OriginalAlignment object. Please refer document of Bio::Alignment::OriginalAlignment.new.
# File lib/bio/alignment.rb, line 2188 def self.new(*arg) OriginalAlignment.new(*arg) end
new2(*arg)
click to toggle source
creates a new Bio::Alignment::OriginalAlignment object. Please refer document of Bio::Alignment::OriginalAlignment.new2.
# File lib/bio/alignment.rb, line 2194 def self.new2(*arg) OriginalAlignment.new2(*arg) end
readfiles(*files)
click to toggle source
creates a new Bio::Alignment::OriginalAlignment object. Please refer document of Bio::Alignment::OriginalAlignment.readfiles.
# File lib/bio/alignment.rb, line 2200 def self.readfiles(*files) OriginalAlignment.readfiles(*files) end