class Bio::Taxonomy
This is general Taxonomy class.
Attributes
pattern = [a-zA-Z0-9_]{2,10} Can refer to any code/abbreviation/mnemonic, such as Bsu for Bacillus subtilis.
An array of strings
value comes from list: domain kingdom, subkingdom, branch, infrakingdom, superphylum, phylum, subphylum, infraphylum, microphylum, superdivision, division, subdivision, infradivision, superclass, class, subclass, infraclass, superlegion, legion, sublegion, infralegion, supercohort, cohort, subcohort, infracohort, superorder, order, suborder, superfamily, family, subfamily, supertribe, tribe, subtribe, infratribe, genus, subgenus, superspecies, species, subspecies, variety, subvariety, form, subform, cultivar, unknown, other
An array of strings. Holds synonyms for scientific names or common names.
Public Class Methods
# File lib/bio/db/phyloxml/phyloxml_elements.rb, line 64 def initialize @common_names = [] @synonyms = [] end