class Bio::RestrictionEnzyme::Range::HorizontalCutRange
Attributes
c_cut_left[R]
c_cut_right[R]
hcuts[R]
max[R]
min[R]
p_cut_left[R]
p_cut_right[R]
Public Class Methods
new( left, right=left )
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# File lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb, line 22 def initialize( left, right=left ) raise "left > right" if left > right # The 'range' here is actually off by one on the left # side in relation to a normal CutRange, so using the normal # variables from CutRange would result in bad behavior. # # See below - the first horizontal cut is the primary cut plus one. # # 1 2 3 4 5 6 7 # G A|T T A C A # +-----+ # C T A A T|G T # 1 2 3 4 5 6 7 # # Primary cut = 2 # Complement cut = 5 # Horizontal cuts = 3, 4, 5 @p_cut_left = nil @p_cut_right = nil @c_cut_left = nil @c_cut_right = nil @min = left # NOTE this used to be 'nil', make sure all tests work @max = right # NOTE this used to be 'nil', make sure all tests work @range = (@min..@max) unless @min == nil or @max == nil # NOTE this used to be 'nil', make sure all tests work @hcuts = (left..right) end
Public Instance Methods
include?(i)
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Check if a location falls within the minimum or maximum values of this range.
Arguments
-
i
: Location to check if it is included in the range
- Returns
-
true
orfalse
# File lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb, line 60 def include?(i) @range.include?(i) end