Deleting WebSphere MQ Java for iSeries™ deletes the objects that belong to it: the QMQMJAVA library, and the subdirectories that belong to MQ Java below the /QIBM/ProdData/mqm directory.
If that leaves no other subdirectories (for example if the MQ Server is installed it uses subdirectories there) then the /QIBM/ProdData/mqm directory itself is deleted.
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